Demos

opm: Demos

Title	html	md	Rmd	R
conduct database I/O using MongoDB	MongoDB-IO.html	MongoDB-IO.md	MongoDB-IO.Rmd	MongoDB-IO.R
conduct database I/O using RMySQL	MySQL-IO.html	MySQL-IO.md	MySQL-IO.Rmd	MySQL-IO.R
conduct database I/O using RPostgreSQL	PostgreSQL-IO.html	PostgreSQL-IO.md	PostgreSQL-IO.Rmd	PostgreSQL-IO.R
conduct database I/O using RSQLite	SQLite-IO.html	SQLite-IO.md	SQLite-IO.Rmd	SQLite-IO.R
use opm and pvclust to calculate clusterings with branch support values	cluster-with-pvalues.html	cluster-with-pvalues.md	cluster-with-pvalues.Rmd	cluster-with-pvalues.R
use opm and BiodiversityR/vegan to draw PCA biplots of Phenotype MicroArray data	custom-PCA.html	custom-PCA.md	custom-PCA.Rmd	custom-PCA.R
identify significant differences in the curve topology of single curves by bootstrap estimates	distinguish-curve-topologies.html	distinguish-curve-topologies.md	distinguish-curve-topologies.Rmd	distinguish-curve-topologies.R
identify positive reactions and distinguish them from weak or negative reactions	identify-positive-reactions.html	identify-positive-reactions.md	identify-positive-reactions.Rmd	identify-positive-reactions.R
apply opm to all CSV files in the working directory to generate HTML, YAML and PDF output	multiple-plate-types.html	multiple-plate-types.md	multiple-plate-types.Rmd	multiple-plate-types.R
compare phenotypic clustering of organisms to their genotypic (phylogenetic) similarity	phenotype-vs-genotype.html	phenotype-vs-genotype.md	phenotype-vs-genotype.Rmd	phenotype-vs-genotype.R
workshop: input PM data	workshop-part-1.html	workshop-part-1.md	workshop-part-1.Rmd	workshop-part-1.R
workshop: add and manipulate metadata	workshop-part-2.html	workshop-part-2.md	workshop-part-2.Rmd	workshop-part-2.R
workshop: visualise raw PM data with opm	workshop-part-3.html	workshop-part-3.md	workshop-part-3.Rmd	workshop-part-3.R
workshop: estimate and visualise curve parameters	workshop-part-4.html	workshop-part-4.md	workshop-part-4.Rmd	workshop-part-4.R
workshop: conduct statistical comparisons of experimental groups	workshop-part-5.html	workshop-part-5.md	workshop-part-5.Rmd	workshop-part-5.R