Package: opm
Version: 1.3.63
Date: 2016-11-14
Title: Analysing Phenotype Microarray and Growth Curve Data
Author: Markus Goeker, with contributions by Benjamin Hofner, Lea A.I.
    Vaas, Johannes Sikorski, Maria del Carmen Montero Calasanz, Jan
    P. Meier-Kolthoff, Nora Buddruhs and Anne Fiebig
Maintainer: Markus Goeker <markus.goeker@dsmz.de>
Depends: R (>= 3.2.0)
Imports: methods, lattice, parallel, boot, hwriter, plotrix,
        Ckmeans.1d.dp, pkgutils (>= 0.7.42), yaml (>= 2.1.7), splines,
        mgcv, grofit (>= 1.1), rjson (>= 0.2.12), nlme, DBI, multcomp
Suggests: optparse, gplots, opmdata (>= 0.4.0), opmextra, testthat,
        KEGGREST, pathview, mboost (>= 2.3.0), gridExtra
Description: Tools for analysing OmniLog(R) and MicroStation(TM)
    phenotype microarray (PM) data as produced by the devices
    distributed by BIOLOG Inc. as well as similar kinds of data
    such as growth curves. Major facilities are plotting data,
    accurately estimating curve parameters, comparing and
    discretising data, creating phylogenetic formats and reports
    for taxonomic journals, drawing the PM analysis results in
    biochemical pathway graphs optionally including genome
    annotations, running multiple comparisons of means, easy
    interaction with powerful feature-selection approaches,
    integrating metadata, using the YAML format for the storage of
    data and metadata, batch conversion of large numbers of files,
    and database I/O.
License: GPL (>= 2)
URL: http://opm.dsmz.de/
MailingList:
        http://lists.r-forge.r-project.org/mailman/listinfo/opm-support
Collate: 'substrate-info.R' 'well-map.R' 'plate-map.R' 'imports.R'
        'package.R' 'constants.R' 'classes.R' 'classes-aux.R'
        'auxiliary-aux.R' 'auxiliary.R' 'kmeans-aux.R' 'kmeans.R'
        'naming-aux.R' 'naming.R' 'metadata.R' 'getter.R'
        'conversion-aux.R' 'conversion.R' 'combination-aux.R'
        'combination.R' 'aggregation-aux.R' 'aggregation.R'
        'discretization.R' 'plotting-aux.R' 'plotting.R' 'io-aux.R'
        'io.R' 'phylogeny-aux.R' 'phylogeny.R' 'data.R' 'testing-aux.R'
        'multcomp-aux.R' 'multcomp.R' 'splinefit-aux.R' 'dbio-aux.R'
        'dbio.R'
LazyData: yes
LazyDataCompression: bzip2
Built: R 3.3.2; ; 2016-11-14 12:57:18 UTC; unix